Network & Publications
Contact us for partnering opportunitites#sharing #vision #passion #innovation
Our Partners
IGATech: Applying Genomics
We have established numerous collaborations with centers of excellence around the world and made our equipment, skills and knowledge available to many researchers and companies for innovative solutions.
Publications
Deep resequencing unveils novel SNPs, InDels, and large structural variants for the clonal fingerprinting of sweet orange [Citrus sinensis (L.) Osbeck]
A duplex sequencing approach for high-sensitivity detection of genome-edited plants
A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm
Mapping taste and flavour traits to genetic markers in lettuce Lactuca sativa.
Mozambican Coffea accessions from Ibo and Quirimba Islands: identification and geographical distribution
Development and application of Single Primer Enrichment Technology (SPET) SNP assay for population genomics analysis and candidate gene discovery in lettuce
Assessment of residual plant DNA in bulk milk for Grana Padano PDO production by a metabarcoding approach
Genetic dissection of fruit maturity date in apricot (P. armeniaca L.) through a Single Primer Enrichment Technology (SPET) approach
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker
A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
Single Primer Enrichment Technology (SPET) for High-Throughput Genotyping in Tomato and Eggplant
Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize
A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline in Taxus baccata L
The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.
The Kiwifruit Genome
A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
Metabarcoding Reveals a Potentially Undescribed Columnaris-Causing Bacterium in Peracute Skin Disease of Rainbow Trout (Oncorhynchus mykiss, Walbaum)
Novel insights on microbiome dynamics during a gill disease outbreak in farmed rainbow trout (Oncorhynchus mykiss)
The Use of Environmental DNA: preliminary characterization of microbiota in three Sicilian lakes
Perturbations in Microbial Communities at Hydrothermal Vents of Panarea Island (Aeolian Islands, Italy)
Environmental DNA: preliminary characterization of microbiota in three Sicilian lakes
Environmental DNA: The First Snapshot of the Vertebrate Biodiversity in Three Sicilian Lakes
Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studies
ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Synergistic parasite-pathogen interactions mediated by host immunity can drive the collapse of honeybee colonies.
Draft Genome Sequence of the Probiotic Yeast Kluyveromyces marxianus fragilis B0399.
Alkaloid chemodiversity in Mandragora spp. is associated with loss-of-functionality of MoH6H, a hyoscyamine 6β-hydroxylase gene
Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm
Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of ‘Lito’ Chromosome 1 and Analysis of Candidate Genes
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra
Physical Map of the Short Arm of Bread Wheat Chromosome 3D
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
Draft genome sequence of Lactobacillus rossiae DSM 15814(T).
Odorant-binding proteins and olfactory coding in the solitary bee Osmia cornuta.
A RAD-based linkage map of kiwifruit (Actinidia chinensis Pl.) as a tool to improve the genome assembly and to scan the genomic region of the gender determinant for the marker-assisted breeding
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
A knowledge base for Vitis vinifera functional analysis
Physical mapping of bread wheat chromosome 5A: an integrated approach
Identification of tumorigenesis-related mRNAs associated with RNA-binding protein HuR in thyroid cancer cells Oncotarget.
Exome Capture with Heterologous Enrichment in Pig (Sus scrofa) PLoS One.
Suggestive linkage of familial mesial temporal lobe epilepsy to chromosome 3q26
Heterozygous reelin mutations cause autosomal-dominant lateral temporal epilepsy
The limits and potential of paleogenomic techniques for reconstructing grapevine domestication
CNV and Structural Variation in Plants: Prospects of NGS Approaches
Identification, Reconstruction And Validation Of Insertions In Resequencing Projects With GapFiller
GAM: Genomic Assemblies Merger
LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome.
A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach.
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill
LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
GAM-NGS: genomic assemblies merger for next generation sequencing.
Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism
De Novo Mutations in SLC25A24 Cause a Disorder Characterized by Early Aging, Bone Dysplasia, Characteristic Face, and Early Demise
Regeneration of the entire human epidermis using transgenic stem cells
Characterization of S-layer proteins of potential probiotic starter culture Lactobacillus brevis SF9B isolated from sauerkraut
The Guiana cacao genetic group (Theobroma cacao L.): a new core collection in French Guiana
A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)
De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock
Reduction of heterozygosity (ROH) as a method to detect mosaic structural variation
Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation
New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array
Impact of an arbuscular mycorrhizal fungus versus a mixed microbial inoculum on the transcriptome reprogramming of grapevine roots
Molecular diversity and landscape genomics of the crop wild relative Triticum urartu across the Fertile Crescent
Genotypic and tissue-specifc variation of Populus nigra transcriptome profles in response to drought
Shifting the limits in wheat research and breeding using a fully annotated reference genome
The microbiota of hematophagous ectoparasites collected from migratory birds
Metagenomic profiles of different types of Italian high-moisture Mozzarella cheese
Structural Variations Affecting Genes and Transposable Elements of Chromosome 3B in Wheats
Genome-wide diversity and global migration patterns in dromedaries follow ancient caravan routes
Evolutionary relevance of lineages in the European black pine (Pinus nigra) in the transcriptomic era
The functional capacity of plantaricin-producing Lactobacillus plantarum SF9C and S-layer-carrying Lactobacillus brevis SF9B to withstand gastrointestinal transit
The miRNA Content of Exosomes Released from the Glioma Microenvironment Can Affect Malignant Progression
Single-Cell Gene Network Analysis and Transcriptional Landscape of MYCN-Amplified Neuroblastoma Cell Lines
Lynch syndrome and Muir-Torre phenotype associated with a recurrent variant in the 3’UTR of the MSH6 gene
An NF-κB signature predicts low-grade glioma prognosis: a precision medicine approach based on patient-derived stem cells
Differential associations between nucleotide polymorphisms and physiological traits in Norway spruce (Picea abies Karst.) plants under contrasting water regimes
The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow
The genomes of 204 Vitis vinifera accessions reveal the origin of European wine grapes
Evaluation of sensitivity and specificity in RNA-Seq-based detection of grapevine viral pathogens
First detection of an Italian human-to-cat outbreak of SARS-CoV-2 Alpha variant – lineage B.1.1.7
ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout
Growth fitness, heme uptake and genomic variants in mutants of oxygen-tolerant Lacticaseibacillus casei and Lactiplantibacillus plantarum strains
